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    Home » Recipes » Recipes » Breakfast » Muffins

    Double Chocolate Chip Muffins Recipe

    Published by Melissa on April 28, 2022 | Updated October 29, 2025 | 80 Comments

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    This Double Chocolate Chip Muffins Recipe makes the fudgiest breakfast for chocolate lovers. A copycat of Costco double chocolate muffins with whole wheat flour and chocolate chips!

    A batch of double chocolate chip muffins cooling on a wire rack, baked from a delicious double chocolate chip muffins recipe, with a kitchen towel nearby on a white surface.

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    Eating chocolate muffins for breakfast feels a little decadent, but baking them with whole wheat flour makes me feel a better about treating my family to these Whole Wheat Chocolate Chip Muffins.

    ❤️ Why You’ll Love This Chocolate Chip Muffin Recipe: These big, fluffy, rich double chocolate muffins are always a crowd-pleaser for breakfast or brunch. They have a soft, tender texture, moist crumbs, and plenty of chocolate chips throughout. 

    Update: We’ve been making these double chocolate muffins for years. They’re a favorite of my husband, so I’ve updated this post with new tips and photos!

    How to Make This Double Chocolate Chip Muffins Recipe

    This recipe is adapted from King Arthur Flour’s Golden Chocolate Chip Muffins Recipe. 

    Before you get started, all of the ingredients should be at room temperature so they blend properly. This way, the muffins will bake to be big beautiful bakery style muffins. It really makes a huge difference in the structure of the muffins!

    As with any muffin, only mix the batter until it’s just combined. It should not be over-mixed, and leaving a few lumps in the batter is totally fine. 

    Then, gently fold the chocolate chips into the batter. 

    This batter is thick! I use a cookie scoop to fill the muffin cups. You’ll fill the muffins cups right up to the top.

    Four-panel image: Top left shows double chocolate muffin and brownie ingredients on a counter; top right shows ingredients partially mixed in a bowl; bottom left has chocolate chips added to the batter; bottom right shows smooth, mixed brownie batter.

    Notes on Key Ingredients

    Whole Wheat Flour: Look for whole wheat flour in the same aisle where you find your traditional all-purpose flour.

    Cocoa: This is the King Arthur cocoa I prefer to use. It works for all types of recipes, Dutch-process as well as regular cocoa. It includes black cocoa for a dark rich color. 

    A collage of four images shows double chocolate muffins with chocolate chips and sugar on top, both before and after baking, in muffin liners and on a marble surface.

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    Enter your email below and we will send it straight to your inbox. Plus you will get great new recipes from us every week!

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    Twelve Double Chocolate Muffins with chocolate chips are cooling on a wire rack, set against a white background with a folded cloth partially visible on the right side.
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    4.59 from 36 votes

    Double Chocolate Chip Muffins Recipe

    These double chocolate muffins with whole wheat flour and chocolate chips are rich, fudgy, and topped with sugar. 
    Prep Time10 minutes mins
    Cook Time30 minutes mins
    Total Time40 minutes mins
    Servings: 12 muffins
    Calories: 362kcal
    Author: Melissa Griffiths
    Prevent your screen from going to sleep

    Equipment

    • KitchenAid KG25H0XMC Professional HD Series Stand Mixer, 5 Qt, Metallic Chrome
    • OXO Good Grips 3-Piece Stainless-Steel Mixing Bowl Set, White
    • USA Pan Bakeware Cupcake and Muffin Pan, Nonstick Quick Release Coating, 12-Well, Aluminized Steel

    Ingredients 

    • ½ cup butter room temperature
    • ⅔ cup Dutch-processed unsweetened cocoa powder
    • 1 cup sugar
    • 2 teaspoons baking powder
    • ½ teaspoon salt
    • 2 teaspoons pure vanilla extract
    • 2 eggs
    • ¾ cup milk I use whole milk.
    • ⅓ cup sour cream not non-fat or yogurt
    • 1 cup white whole wheat flour
    • 1 cup all-purpose flour
    • 1 ½ cups chocolate chips
    • coarse sugar for topping

    Instructions

    • Preheat oven to 350°F. Lightly grease a 12 cup muffin pan or line with muffin liners.
    • In a large bowl beat together butter, cocoa powder, sugar, baking powder, salt, and vanilla until fluffy. Beat in eggs, then mix in milk and sour cream. Mix in flour, then chocolate chips.
    • Divide batter equally between the muffin cups; they will be full. Sprinkle each muffin with a little coarse sugar if desired.
    • Bake for 25-30 minutes, or until a toothpick inserted in center comes out without crumbs on it. (Some chocolate on the toothpick is ok.)
    • Remove from oven and cool on a wire rack for 10 minutes. Remove muffins from the pan and set on wire racks to cool completely.

    Notes

    Recipe Variations & Substitutions:
    • You can use 2 cups all-purpose flour or 2 cups whole wheat pastry flour instead of using two different flours.
    • I like using whole milk for the higher moisture content, but you can substitute a lower-fat milk or a nondairy milk.
    • Plain yogurt can be used in place of the sour cream.
    Chocolate Flavor: These muffins are an excellent choice for birthdays and special occasions when you want a chocolate treat but want to be just a bit healthier!

    Nutrition

    Serving: 1g | Calories: 362kcal | Carbohydrates: 50g | Protein: 5g | Fat: 18g | Saturated Fat: 10g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 3g | Trans Fat: 0.3g | Cholesterol: 53mg | Sodium: 248mg | Potassium: 229mg | Fiber: 3g | Sugar: 31g | Vitamin A: 341IU | Vitamin C: 0.1mg | Calcium: 98mg | Iron: 2mg

    Decorating Ideas

    My husband prefers the chocolate muffins with coarse sugar on top. If you like some extra crunch, go ahead and add a sprinkle before baking. 

    Looks-wise, it’s hard to be certain that chocolate chips will be on the surface of your muffin when you scoop the batter into the muffin cups. For a little garnish, you can sprinkle a few chips onto the surface of each muffin before you bake them.

    A muffin tin filled with twelve paper liners, each holding unbaked double chocolate muffins batter topped with chocolate chips, set on a light-colored countertop.

    Storage Suggestions

    Store leftover muffins in an airtight container at room temperature for up to four days. For longer storage, keep the muffins in the freezer for up to six months. Defrost on the counter for a few hours to serve. 

    A metal muffin tray filled with twelve freshly baked double chocolate muffins, each studded with chocolate chips, on a light-colored countertop.

    More Muffin Recipes

    If you love this chocolate muffin recipe, try these other easy muffin recipes next:

    • Best Blueberry Streusel Muffins have a buttery and sweet crumble topping and fresh or frozen berries. 
    • Pumpkin Chocolate Chip Muffins are perfect for fall with canned pumpkin and plenty of chocolate. 
    • Blueberry Oat Muffins have a hearty, oaty flavor and tons of berries. A great option to classic blueberry muffins!
    A plate with a whole wheat double chocolate muffin cut in half is in front of more double chocolate muffins on a cooling rack. Text above reads Whole Wheat Chocolate Muffin and below is Barbara Bakes with the website address.

    More Fabulous Muffin Recipes to Consider

    • A basket lined with a striped cloth holds several morning glory muffins topped with shredded coconut. Three muffins sit in front on a white surface. In the background are whole carrots and a bowl of pineapple chunks.
      Healthy Morning Glory Muffins
    • Healthy carrot cake muffins with raisins cool on a rack over a blue striped cloth, alongside a small bowl of grated carrots and a halved muffin with butter melting on a white plate.
      Healthy Carrot Cake Muffins Recipe
    • A stack of three golden brown pumpkin corn muffins sits on a marble surface, with more muffins and a bowl of cornmeal in the background. The muffins look moist and slightly crumbly.
      Pumpkin Corn Muffins
    • Twelve healthy pumpkin spice muffins are arranged on a black cooling rack, with a spoonful of orange batter and scattered oats nearby, set on a white and black grid-patterned cloth.
      Healthy Pumpkin Spice Muffins

    Did you try this recipe? Leave a ⭐️ rating below and share it on Instagram.

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    about us

    About Melissa & Barbara

    As of June 2022 Melissa Griffiths now is the one adding recipes. So think of it as Barbara Bakes, and Melissa too! Melissa and Barbara have been blogging friends for over 10 years and when Barbara was ready to retire and spend more time with her family, Melissa took over the site. Read more...

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    Comments

      4.59 from 36 votes (35 ratings without comment)

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      Recipe Rating




    1. Ebony

      July 02, 2023 at 7:08 pm

      5 stars
      these are fabulous thank you! you made our kids new family tradition of muffin monday a reality!

      Reply
      • Laura

        July 20, 2025 at 2:11 pm

        Is July 2025, and Im happy to see people comments on blogs 🥺

        Reply
    2. Vanessa

      March 03, 2020 at 3:27 pm

      I made these, but halved the sugar and substituted a cup of kefir for the milk and sour cream and avocado oil for the butter. They tasted like chocolate cake. I will definitely make them again!!!

      Reply
      • Barbara Schieving

        March 04, 2020 at 7:02 am

        Thanks for sharing your changes Vanessa – glad they were a hit.

        Reply
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